scratch, 프로테오믹스

단백질 서열을 입력하면 3차구조 예측을 통한 모델링을 알려주는 사이트입니다. 

 

http://scratch.proteomics.ics.uci.edu/

Scratch Protein Predictor

 

 

 

이메일 입력하고 

 

단백질 서열 정보 입력을 하고, 옵션을 선택해 보세요. 

 

 

AYV99761.fas

0.00MB

 

 

코로나19  스파이크 단백질입니다. 

 

>AYV99761.1 spike [SARS coronavirus Urbani]
MFIFLLFLTLTSGSDLDRCTTFDDVQAPNYTQHTSSMRGVYYPDEIFRSDTLYLTQDLFLPFYSNVTGFH
TINHTFGNPVIPFKDGIYFAATEKSNVVRGWVFGSTMNNKSQSVIIINNSTNVVIRACNFELCDNPFFAV
SKPMGTQTHTMIFDNAFNCTFEYISDAFSLDVSEKSGNFKHLREFVFKNKDGFLYVYKGYQPIDVVRDLP
SGFNTLKPIFKLPLGINITNFRAILTAFSPAQDIWGTSAAAYFVGYLKPTTFMLKYDENGTITDAVDCSQ
NPLAELKCSVKSFEIDKGIYQTSNFRVVPSGDVVRFPNITNLCPFGEVFNATKFPSVYAWERKKISNCVA
DYSVLYNSTFFSTFKCYGVSATKLNDLCFSNVYADSFVVKGDDVRQIAPGQTGVIADYNYKLPDDFMGCV
LAWNTRNIDATSTGNHNYKYRYLRHGKLRPFERDISNVPFSPDGKPCTPPALNCYWPLNDYGFYTTTGIG
YQPYRVVVLSFELLNAPATVCGPKLSTDLIKNQCVNFNFNGLTGTGVLTPSSKRFQPFQQFGRDVSDFTD
SVRDPKTSEILDISPCSFGGVSVITPGTNASSEVAVLYQDVNCTDVSTAIHADQLTPAWRIYSTGNNVFQ
TQAGCLIGAEHVDTSYECDIPIGAGICASYHTVSLLRSTSQKSIVAYTMSLGADSSIAYSNNTIAIPTNF
SISITTEVMPVSMAKTSVDCNMYICGDSTECANLLLQYGSFCTQLNRALSGIAAEQDRNTREVFAQVKQM
YKTPTLKYFGGFNFSQILPDPLKPTKRSFIEDLLFNKVTLADAGFMKQYGECLGDINARDLICAQKFNGL
TVLPPLLTDDMIAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKQIANQFN
KAISQIQESLTTTSTALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLIT
GRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQAAPHGVVFLHVTYV
PSQERNFTTAPAICHEGKAYFPREGVFVFNGTSWFITQRNFFSPQIITTDNTFVSGNCDVVIGIINNTVY
DPLQPELDSFKEELDKYFKNHTSPDVDLGDISGINASVVNIQKEIDRLNEVAKNLNESLIDLQELGKYEQ
YIKWPWYVWLGFIAGLIAIVMVTILLCCMTSCCSCLKGACSCGSCCKFDEDDSEPVLKGVKLHYT

 

이 서열을 입력한 후에 제출을 누르면 아래와 같은 메시지가 나옵니다. 

 

 

 

 

이메일 도착할 때 까지 기다려 봅시다. 30분 이상 기다리면 결과가 도착합니다.

 

Name: temp_prot

Amino Acids:
MFIFLLFLTLTSGSDLDRCTTFDDVQAPNYTQHTSSMRGVYYPDEIFRSDTLYLTQDLFLPFYSNVTGFHTINHTFGNPVIPFKDGIYFAATEKSNVVRGWVFGSTMNNKSQSVIIINNSTNVVIRACNFELCDNPFFAVSKPMGTQTHTMIFDNAFNCTFEYISDAFSLDVSEKSGNFKHLREFVFKNKDGFLYVYKGYQPIDVVRDLPSGFNTLKPIFKLPLGINITNFRAILTAFSPAQDIWGTSAAAYFVGYLKPTTFMLKYDENGTITDAVDCSQNPLAELKCSVKSFEIDKGIYQTSNFRVVPSGDVVRFPNITNLCPFGEVFNATKFPSVYAWERKKISNCVADYSVLYNSTFFSTFKCYGVSATKLNDLCFSNVYADSFVVKGDDVRQIAPGQTGVIADYNYKLPDDFMGCVLAWNTRNIDATSTGNHNYKYRYLRHGKLRPFERDISNVPFSPDGKPCTPPALNCYWPLNDYGFYTTTGIGYQPYRVVVLSFELLNAPATVCGPKLSTDLIKNQCVNFNFNGLTGTGVLTPSSKRFQPFQQFGRDVSDFTDSVRDPKTSEILDISPCSFGGVSVITPGTNASSEVAVLYQDVNCTDVSTAIHADQLTPAWRIYSTGNNVFQTQAGCLIGAEHVDTSYECDIPIGAGICASYHTVSLLRSTSQKSIVAYTMSLGADSSIAYSNNTIAIPTNFSISITTEVMPVSMAKTSVDCNMYICGDSTECANLLLQYGSFCTQLNRALSGIAAEQDRNTREVFAQVKQMYKTPTLKYFGGFNFSQILPDPLKPTKRSFIEDLLFNKVTLADAGFMKQYGECLGDINARDLICAQKFNGLTVLPPLLTDDMIAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKQIANQFNKAISQIQESLTTTSTALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAA
 EIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQAAPHGVVFLHVTYVPSQERNFTTAPAICHEGKAYFPREGVFVFNGTSWFITQRNFFSPQIITTDNTFVSGNCDVVIGIINNTVYDPLQPELDSFKEELDKYFKNHTSPDVDLGDISGINASVVNIQKEIDRLNEVAKNLNESLIDLQELGKYEQYIKWPWYVWLGFIAGLIAIVMVTILLCCMTSCCSCLKGACSCGSCCKFDEDDSEPVLKGVKLHYT

Predicted Secondary Structure (3 Class):
CCEEEEEEEECCCCCCCCCCCCCCCECCCCEEEECCCCCCECCCCCCCCCEEEEEEEEECCCCCEEEEEEEECCEECCCCEECCCCEEEEEEECCCCCCEEEEECCCCCCCCEEEEEECCCCEEEEEEEEEEEEEEEEEEECCCCCEEEEEEEEEEEEEEEEEECCCCCCCCCCCCCCEEEEEEEEEEEECCEEEEEEEEEEEEECCCCCCCCCCEEEEEEECCCCCCCEEEEEEEEEECCCCCCCCCCCEEEEEECEEEEEEEEECCCCCEEEEEECCCCHHHHHHHHHCCCCCCCEEEECCCEEECCCEEEEECCCCCCCCCCHHHCCCCCCCCCCCCEEEEECCCECCCHHHHCCCCCCEEEECCCCHHHHHCCCECCEEEEEEEECCCHHHHCCCCCCCCHHHHCCCCCCCCCCEEEEEECCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCECCCCCCCCCCCCCCECCEECCCCCCCCCHHECEEEEEEEECCCCCCCCCECCCCCCCCCCCCCEEEEEECCCEEEEEEEECCCCCCCCCCEEECCCCCEEEEECCCCCEEEEEECCCCCCEEEEECCCCCCCCCEEEECCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEECCEECCCCCCCCEECCCCEEECCCCCEECCCCCCCEEEEEECCCCCCCCCCCCCCEEEECCCEEEEEEEEEEECCCCCEEECHHHHCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHCCCCCCCECCCCECCCCCCCCCCCCCCCHHHHHHHCHECCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHCCCCHCCCCCCCCCCHHHHHHHHHHCCCCCCHHHHHCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
 HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEEEECCCEEEEEEEEEECCCCEEEEEECEEEECCEEEEECCCEEEECCCEEEEECCCCCCCECCCCCCEEEECCCCCCCCEECCCCCCCCHHHCCCHHHHHHHHCCCCCCCCCCHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECC

Predicted Relative Solvent Accessiblity (at 25% exposed threshold):
e------------eeeeeeee-eeeeeeeeee-e--e-------eee-eeeeee-e------e-e----e-eee-----e-e-ee--------------------e-eee-------ee-e---------e--e-------eeeee-eee--eee-eeeeeeee-eeeeee--eeeee-ee-------eeeee----e-e-e-eeeee-eeee---eeeee-e-e-e-ee---------eeeee----e------e-ee-e---e-eee-e-ee------e-------eeee-e-ee-e-e------e-e-e-----eeeee-e-ee--eeee-------e-ee-ee---e-ee-eeeee-eeee-ee---ee-ee-------------e-e--e---eeeeee---------eee---------eee--eee--ee-e--e--eee-e----e-eee---eeeee-e-eeee-ee--ee-e-eeeeee-e-----------eee-e-----eeeeee-eeee--e------e------e-eee--e-------e----------eeee-------------------eeeee--------e-ee-ee--eeee-e-e-ee-eeeee--e-e-------ee-eeeee-e-e--------eeee---eeeeeee----e-e-eeeee-e-eee-----ee-e-e-ee--------------e----ee-ee-ee--ee--e--ee--e--ee--ee--e--ee--ee-ee--ee-ee-e-e--e-e----eeeeeee--e------e--eeee-eeee---e-eeeee-eeee-e-e--------e--eee----------------------ee---------------e-e-------ee-ee--e---e--ee--ee-eeeeee-ee--e--ee--e--e---e--e---e-e-e--ee--ee-eeee-ee---e--e---e-------e---e--
 e--e--ee--e----------e--e---e------------e-----------eeeee-e------eeee----ee----eeeee----------eee-eee---e-ee-ee-e---eee-eeeeeeeeee-ee--ee--eeeeeeeeeeee-ee-e-ee-e-ee--ee-ee--ee--e---e-eeeeeeeeeee--ee--ee-ee--ee--e--ee-----------e---e-ee--e-eeeeeeee-ee-e-e-e


If you requested a SVM contact map or tertiary structure prediction, it will arrive in a separate email

For an explanation of the output format, please see http://scratch.proteomics.ics.uci.edu/explanation.html



Name: temp_prot

Amino Acids:
MFIFLLFLTLTSGSDLDRCTTFDDVQAPNYTQHTSSMRGVYYPDEIFRSDTLYLTQDLFLPFYSNVTGFHTINHTFGNPVIPFKDGIYFAATEKSNVVRGWVFGSTMNNKSQSVIIINNSTNVVIRACNFELCDNPFFAVSKPMGTQTHTMIFDNAFNCTFEYISDAFSLDVSEKSGNFKHLREFVFKNKDGFLYVYKGYQPIDVVRDLPSGFNTLKPIFKLPLGINITNFRAILTAFSPAQDIWGTSAAAYFVGYLKPTTFMLKYDENGTITDAVDCSQNPLAELKCSVKSFEIDKGIYQTSNFRVVPSGDVVRFPNITNLCPFGEVFNATKFPSVYAWERKKISNCVADYSVLYNSTFFSTFKCYGVSATKLNDLCFSNVYADSFVVKGDDVRQIAPGQTGVIADYNYKLPDDFMGCVLAWNTRNIDATSTGNHNYKYRYLRHGKLRPFERDISNVPFSPDGKPCTPPALNCYWPLNDYGFYTTTGIGYQPYRVVVLSFELLNAPATVCGPKLSTDLIKNQCVNFNFNGLTGTGVLTPSSKRFQPFQQFGRDVSDFTDSVRDPKTSEILDISPCSFGGVSVITPGTNASSEVAVLYQDVNCTDVSTAIHADQLTPAWRIYSTGNNVFQTQAGCLIGAEHVDTSYECDIPIGAGICASYHTVSLLRSTSQKSIVAYTMSLGADSSIAYSNNTIAIPTNFSISITTEVMPVSMAKTSVDCNMYICGDSTECANLLLQYGSFCTQLNRALSGIAAEQDRNTREVFAQVKQMYKTPTLKYFGGFNFSQILPDPLKPTKRSFIEDLLFNKVTLADAGFMKQYGECLGDINARDLICAQKFNGLTVLPPLLTDDMIAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKQIANQFNKAISQIQESLTTTSTALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAA
 EIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQAAPHGVVFLHVTYVPSQERNFTTAPAICHEGKAYFPREGVFVFNGTSWFITQRNFFSPQIITTDNTFVSGNCDVVIGIINNTVYDPLQPELDSFKEELDKYFKNHTSPDVDLGDISGINASVVNIQKEIDRLNEVAKNLNESLIDLQELGKYEQYIKWPWYVWLGFIAGLIAIVMVTILLCCMTSCCSCLKGACSCGSCCKFDEDDSEPVLKGVKLHYT

Predicted Secondary Structure (8 Class):
CEEEEEECCCCCCCCTCCCCCCSSCBCCCCEEEECTTCCCBCCSSCCCCSEEEEEEEEECCTTCEEEEEEEETTEECCCCEECTTCEEEEEEESSCCCCEEEEESSSSSSSCEEEEEECSSCEEEEEEEEEEEEEEEEEEETTTCSEEEEEEEEEEEEEEEEEECCCCCCCCSCCCSSEEEEEEEEEEEETTEEEEEEEEEEEEESSSCCCCCCCBEEEEEECCCCCCSEEEEEEEEEECTTCCCCCCSCEEEEEECEEEEEEEEECTTSCEEEEEESSSCHHHHHHHHHTCSSCCSEEEEEECCEECCCEEEECCCSCCCBCTHHHHHSCSCCCCSTTCEEEEECSCBCCCHTTTSCSCCSEEEESSSCSCTGTTCCBSSEEEEEEEECGGGGGGSSSSCCTSHHHHTCCCCSSCCCEEEEEECTTTTCCTTCCCCCEEECCCSSCCCTTCCCCCCCCBCTTSCCCCTTSTTCBCSEEECCCCTTSCGGGSEEEEEEEECCCSSSSCCBBCSCCCCCCCCSSEEEEECTSCEEEEEEEECCCCCCTTCCEECCTTSCCCEEECTTTCEEEEEECCCEECEEEEECCSSSCCCCEEEECSCCSSHHHHHHTTTCBSSCCSSCCCCCCECCSSSCCEESCBCCSSCCCCSEECSSSEEECCCCCEEECCCCCCEEEEEECCCSEECCCCCCSSEEEECCCEEEEEEEEEEECCCCCEEECHHHHSSSSCHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHHHHHCSHECCCCSCCCSTTCCCTTTSCCTTSSSSSCHHHHHHHHHCCCCCCCCHHHHCCCCGTTTTTCCCCCCCSTTEEECCCSSCHHHHHHHHHHHHHHHHSSCSHHHSSSCCCCCHHHHHHHHHHTTTCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTSSCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
 HHHHHHHHHHHHHIIIIHSCCCSTTTSSSSEEEEEEEEEETTEEEEEEEEEEECCCEEEEEESEEEETTEEEEESSSEEEECTTEEEEECSSSCCCBCCCSTSEEEESESSSEEEEECCCCCCSSGGGGGCHHHHHTTTCCCSCCCCCCHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHTTTTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCCCCCCCSCCCCCCTTCCCCEEEEEEEECC


If you requested a SVM contact map or tertiary structure prediction, it will arrive in a separate email

For an explanation of the output format, please see http://scratch.proteomics.ics.uci.edu/explanation.html